• Galaxy platform for data processing and analysis
• Pipelines for data analysis
  • DNA-Seq
    • Variant calling – BWA/Bowtie2, GATK, GEMINI
    • Copy number variations (CNVs) – XHMM
    • Identification the causative genes for rare disorders – PhenGen
  • RNA-Seq
    • Variant calling – STAR, TopHat2, GATK
    • Differential analysis of microRNA – SHRiMP, DESeq2
    • Gene fusion detection – TopHat2, ChimeraScan, Chimera
  • Metagenomics – Amplicon 16S
    • Biodiversity analysis – QIIME
    • Taxonomic analysis – QIIME
  • Proteomics
    • Trans-Proteomic Pipeline

Biostatistics

• Data analysis – R
• Relationship inference – KING